Bio- ja siirdemeditsiini instituut

BSMI andmed

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1 to 10 of 10 Results

BSMI andmed(Tartu Ülikool) Bio- ja siirdemeditsiini instituudi teadustegevuse eesmärk on läbi viia nii biomeditsiini-alaseid alusuuringuid kui ka siirdemeditsiini rakendusuuringuid. The departments at the Institute of Biomedicine and Translational Medicine have diverse research interests with focus on molecular medicine that studies the causes and mechanisms of diseases and...
Sequence data of body site-specific microbiota during pregnancy Oct 20, 2025 - BSMI andmed Mändar, Reet; Kõljalg, Siiri; Štšepetova, Jelena, 2025, "Sequence data of body site-specific microbiota during pregnancy", https://doi.org/10.23673/RE-549, DATADOI, V1 The dataset comprises a total of 443 samples collected from 105 pregnant women. It contains sequence data derived from clinical material, obtained through 16S rRNA gene sequencing of DNA extracted from the following sample types: 85 vaginal, 84 cervical, 105 urine, 85 oral and 84 rectal samples.
Sequence data of HUMB collection 1.0 Aug 6, 2025 - BSMI andmed Mändar, Reet; Rööp, Tiiu, 2025, "Sequence data of HUMB collection 1.0", https://doi.org/10.23673/RE-536, DATADOI, V1 Human Microbiota Biobank (HUMB) at University of Tartu, Estonia, was established to support and promote research activities in the field of human microbiota. The collection contains more than 20,000 bacterial strains, both lactic acid bacteria and opportunistic bacteria. The dataset contains sequence data of a portion of the strains.
Mother and child stool bacteriomes: links to maternal gestational diabetes and atopic dermatitis in 1–2-years-old children Apr 28, 2025 - BSMI andmed Alnek, Kristi; Bärenson, Anu; Aasmets, Oliver; Janson, Helis; Talja, Ija; Laht, Brita; Vorobjova, Tamara; Kirss, Anne; Cinek, Ondrej; Uibo, Raivo; Tagoma, Aili; HEDIMED Investigators group, 2025, "Mother and child stool bacteriomes: links to maternal gestational diabetes and atopic dermatitis in 1–2-years-old children", https://doi.org/10.23673/RE-512, DATADOI, V1 This file contains reads based on ASV data of the gut bacteriomes of mothers with and without GDM and those of their children (1-2 years old) resulting from the pregnancies.
Research data for Early trigeminal and sensory impairment and lysosomal dysfunction in accurate models of Wolfram syndrome Dec 13, 2024 - BSMI andmed Hickey, Miriam, 2024, "Research data for Early trigeminal and sensory impairment and lysosomal dysfunction in accurate models of Wolfram syndrome", https://doi.org/10.23673/RE-495, DATADOI, V1 We present here data from our paper Early trigeminal and sensory impairment and lysosomal dysfunction in accurate models of Wolfram syndrome. We include data underlying all figures and tables. Research data for publicly available data can be found as cited in README file.
Levodopa impairs lysosomal function in sensory neurons in vitro Sep 16, 2024 - BSMI andmed Hickey, Miriam, 2024, "Levodopa impairs lysosomal function in sensory neurons in vitro", https://doi.org/10.23673/RE-477, DATADOI, V1 Parkinson’s disease (PD) is one of the most common chronic, degenerative brain diseases worldwide. Patients are diagnosed on the basis of slowness of movement and/or tremor and/or stiffness. However, many symptoms that are not movement related are now well recognized. Patients show changes in skin sensation, and the vast majority of patients show l...
Antibodies against Clostridium butyricum in the children of mothers at risk for gestational diabetes Jun 20, 2024 - BSMI andmed Peterson, Celeste; Tagoma, Aili; Alnek, Kristi; Bärenson, Anu; Vorobjova, Tamara; Talja, Ija; Janson, Helis; Kirss, Anne; Kõljalg, Siiri; Sinkkonen, Aki; Roslund, Marja Irmeli; HEDIMED Investigator group; Uibo, Raivo, 2024, "Antibodies against Clostridium butyricum in the children of mothers at risk for gestational diabetes", https://doi.org/10.23673/RE-470, DATADOI, V1 Clostridium butyricum T2F3 specific IgA and IgG antibody response detection using immunoblot.
Sequenced placenta, serum and urine miRNomes of three healthy pregnancies Jul 11, 2022 - BSMI andmed Laan, Maris; Inno, Rain, 2022, "Sequenced placenta, serum and urine miRNomes of three healthy pregnancies", https://doi.org/10.23673/RE-348, DATADOI, V1 Sequenced miRNomes of the placenta, serum, and urine samples from three healthy pregnant females. Samples are collected from the third trimester.
Dynamics of hepatitis C epidemic among people living with HIV in Estonia based on Estonian HIV cohort study Jul 16, 2021 - BSMI andmed Kase, Kerstin; Avi, Radko; Toompere, Karolin; Rajasaar, Heli; Pauskar, Merit; Soodla, Pilleriin; Jõgeda, Ene-Ly; Zilmer, Kai; Lutsar, Irja; Huik, Kristi, 2021, "Dynamics of hepatitis C epidemic among people living with HIV in Estonia based on Estonian HIV cohort study", https://doi.org/10.23673/RE-290, DATADOI, V1 Materials to Dynamics of hepatitis C epidemic among people living with HIV in Estonia based on Estonian HIV cohort study
The Concordance of the Limiting Antigen and the Bio-Rad Avidity Assays in Persons from Estonia Infected Mainly with HIV-1 CRF06_cpx Apr 11, 2019 - BSMI andmed Huik, Kristi; Soodla, Pilleriin; Pauskar, Merit; Owen, Michele; Luo, Wei; Murphy, Gary; Jõgeda, Ene-Ly; Kallas, Eveli; Rajasaar, Heli; Avil, Radko; Masciotra, Silvina; Lutsar, Irja, 2019, "The Concordance of the Limiting Antigen and the Bio-Rad Avidity Assays in Persons from Estonia Infected Mainly with HIV-1 CRF06_cpx", https://doi.org/10.15155/RE-59, DATADOI, V1 Dataset

BSMI andmed(Tartu Ülikool)

Bio- ja siirdemeditsiini instituudi teadustegevuse eesmärk on läbi viia nii biomeditsiini-alaseid alusuuringuid kui ka siirdemeditsiini rakendusuuringuid. The departments at the Institute of Biomedicine and Translational Medicine have diverse research interests with focus on molecular medicine that studies the causes and mechanisms of diseases and...

Sequence data of body site-specific microbiota during pregnancy

Oct 20, 2025 - BSMI andmed

Mändar, Reet; Kõljalg, Siiri; Štšepetova, Jelena, 2025, "Sequence data of body site-specific microbiota during pregnancy", https://doi.org/10.23673/RE-549, DATADOI, V1

The dataset comprises a total of 443 samples collected from 105 pregnant women. It contains sequence data derived from clinical material, obtained through 16S rRNA gene sequencing of DNA extracted from the following sample types: 85 vaginal, 84 cervical, 105 urine, 85 oral and 84 rectal samples.

Sequence data of HUMB collection 1.0

Aug 6, 2025 - BSMI andmed

Mändar, Reet; Rööp, Tiiu, 2025, "Sequence data of HUMB collection 1.0", https://doi.org/10.23673/RE-536, DATADOI, V1

Human Microbiota Biobank (HUMB) at University of Tartu, Estonia, was established to support and promote research activities in the field of human microbiota. The collection contains more than 20,000 bacterial strains, both lactic acid bacteria and opportunistic bacteria. The dataset contains sequence data of a portion of the strains.

Mother and child stool bacteriomes: links to maternal gestational diabetes and atopic dermatitis in 1–2-years-old children

Apr 28, 2025 - BSMI andmed

Alnek, Kristi; Bärenson, Anu; Aasmets, Oliver; Janson, Helis; Talja, Ija; Laht, Brita; Vorobjova, Tamara; Kirss, Anne; Cinek, Ondrej; Uibo, Raivo; Tagoma, Aili; HEDIMED Investigators group, 2025, "Mother and child stool bacteriomes: links to maternal gestational diabetes and atopic dermatitis in 1–2-years-old children", https://doi.org/10.23673/RE-512, DATADOI, V1

This file contains reads based on ASV data of the gut bacteriomes of mothers with and without GDM and those of their children (1-2 years old) resulting from the pregnancies.

Research data for Early trigeminal and sensory impairment and lysosomal dysfunction in accurate models of Wolfram syndrome

Dec 13, 2024 - BSMI andmed

Hickey, Miriam, 2024, "Research data for Early trigeminal and sensory impairment and lysosomal dysfunction in accurate models of Wolfram syndrome", https://doi.org/10.23673/RE-495, DATADOI, V1

We present here data from our paper Early trigeminal and sensory impairment and lysosomal dysfunction in accurate models of Wolfram syndrome. We include data underlying all figures and tables. Research data for publicly available data can be found as cited in README file.

Levodopa impairs lysosomal function in sensory neurons in vitro

Sep 16, 2024 - BSMI andmed

Hickey, Miriam, 2024, "Levodopa impairs lysosomal function in sensory neurons in vitro", https://doi.org/10.23673/RE-477, DATADOI, V1

Parkinson’s disease (PD) is one of the most common chronic, degenerative brain diseases worldwide. Patients are diagnosed on the basis of slowness of movement and/or tremor and/or stiffness. However, many symptoms that are not movement related are now well recognized. Patients show changes in skin sensation, and the vast majority of patients show l...

Antibodies against Clostridium butyricum in the children of mothers at risk for gestational diabetes

Jun 20, 2024 - BSMI andmed

Peterson, Celeste; Tagoma, Aili; Alnek, Kristi; Bärenson, Anu; Vorobjova, Tamara; Talja, Ija; Janson, Helis; Kirss, Anne; Kõljalg, Siiri; Sinkkonen, Aki; Roslund, Marja Irmeli; HEDIMED Investigator group; Uibo, Raivo, 2024, "Antibodies against Clostridium butyricum in the children of mothers at risk for gestational diabetes", https://doi.org/10.23673/RE-470, DATADOI, V1

Clostridium butyricum T2F3 specific IgA and IgG antibody response detection using immunoblot.

Sequenced placenta, serum and urine miRNomes of three healthy pregnancies

Jul 11, 2022 - BSMI andmed

Laan, Maris; Inno, Rain, 2022, "Sequenced placenta, serum and urine miRNomes of three healthy pregnancies", https://doi.org/10.23673/RE-348, DATADOI, V1

Sequenced miRNomes of the placenta, serum, and urine samples from three healthy pregnant females. Samples are collected from the third trimester.

Dynamics of hepatitis C epidemic among people living with HIV in Estonia based on Estonian HIV cohort study

Jul 16, 2021 - BSMI andmed

Kase, Kerstin; Avi, Radko; Toompere, Karolin; Rajasaar, Heli; Pauskar, Merit; Soodla, Pilleriin; Jõgeda, Ene-Ly; Zilmer, Kai; Lutsar, Irja; Huik, Kristi, 2021, "Dynamics of hepatitis C epidemic among people living with HIV in Estonia based on Estonian HIV cohort study", https://doi.org/10.23673/RE-290, DATADOI, V1

Materials to Dynamics of hepatitis C epidemic among people living with HIV in Estonia based on Estonian HIV cohort study

The Concordance of the Limiting Antigen and the Bio-Rad Avidity Assays in Persons from Estonia Infected Mainly with HIV-1 CRF06_cpx

Apr 11, 2019 - BSMI andmed

Huik, Kristi; Soodla, Pilleriin; Pauskar, Merit; Owen, Michele; Luo, Wei; Murphy, Gary; Jõgeda, Ene-Ly; Kallas, Eveli; Rajasaar, Heli; Avil, Radko; Masciotra, Silvina; Lutsar, Irja, 2019, "The Concordance of the Limiting Antigen and the Bio-Rad Avidity Assays in Persons from Estonia Infected Mainly with HIV-1 CRF06_cpx", https://doi.org/10.15155/RE-59, DATADOI, V1

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